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#INSTALL PACKAGES IN R FOR MAC INSTALL#
#INSTALL PACKAGES IN R FOR MAC MAC#

If it does type the following to close R: q()

#INSTALL PACKAGES IN R FOR MAC INSTALL#

This should install everything, including dependencies,.

If asked to install dependencies or by source make sure to.

> install.packages("rattle", dependencies = T) > install.packages("cairoDevice", dependencies = T) > install.packages("RGtk2", dependencies = T)

Copy and paste these commands one at a time within R and whenĪsked for CRAN press 4 (ignore any warnings and note it may run for.

Now enter this command as capitalised: R.

Ensure cairo does not exist yet (if you get an error that itĭoesn't exist that's fine): brew uninstall -force cairo.

We need some dependencies for Rattle: brew install gtk+.

To install R, copy/paste this into your terminal and press.

Go to homebrew's website and copy/paste the command into.

We can install that by copy/pasting into terminal and

You will need to install XCode Command Line Tools before.

If there is a recommendation for a cleanup run If you had aįailed installation previously run brew doctor first to clear Prompted for dependencies to be installed press yes. If at any time during the process you are

Restart R and try: library(rattle) rattle()Įric Lin provided the following steps.

Install: install.packages("ot") to get the plots.

Next, run: install.packages("rattle",type="source").

Run "R" in the terminal to get the R command line and run:.

PATH=/opt/local/bin:/opt/local/sbin:$PATH

If you already have a terminal running, restart it and run theĬommand: sudo port install gtk2 # (X11 - not aqua).

has disappeared and has probably been replacedĪsara Senaratne tested the following steps : That he has pre-built the binaries of RGtk2 and cairoDevice so that weĬan easily install rattle.

#INSTALL PACKAGES IN R FOR MAC MAC#

The definitive guide to installing rattle on the Mac as of June Tar: Error exit delayed from previous errors.Įrror in if (!file.exists(file.Rattle: Installation on Macintosh OS X (Leopard and Lion) I installed jags from source as you suggested in the solution above but I get the following error: with-jags-lib=/Users/casallas/homebrew/opt/jags/lib' The easiest solution is to install rjags from source, using devtools::install_url with the following configure.args, as specified in rjags README: devtools::install_url("",Īrgs="-configure-args='-with-jags-include=/Users/casallas/homebrew/opt/jags/include/JAGS

Referenced from: /Users/casallas/Library/R/3.0/library/rjags/libs/rjags.soĮrror: package or namespace load failed for ‘rjags’Īs you can see, rjags is expecting jags to be in /usr/local.

)Įrror: unable to load shared object '/Users/casallas/Library/R/3.0/library/rjags/libs/rjags.so':ĭlopen(/Users/casallas/Library/R/3.0/library/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.3.dylib onLoad failed in loadNamespace() for 'rjags', details:Ĭall: dyn.load(file, DLLpath = DLLpath. However, my homebrew is setup on my home directory ( /Users/casallas/homebrew) rather than the default, /usr/local.Įverything works fine, except that loading the library doesn't work: library(rjags)Įrror. Non-default jags installation The problem

Setting the correct CC and CXX, in my case: CC=clangĭo this and then retry install.packages("rjags") or devtools::install_url. It's probably because R is not finding the right compiler, therefore you need to create or modify the file ~/.R/Makevars If you run into a problem like: configure: error: C++ compiler cannot create executables

Install jags: in the terminal using homebrew brew install jags.